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data visualization
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12
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Deseq2 rlog or 'regular' normalization?
Deseq2
rlog transformation
data visualization
8.6 years ago
sunil.mangalam
• 0
4
votes
3
replies
711
views
RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2
RNA-Seq
uniform distribution
data visualization
updated 4.2 years ago by
Steve Lianoglou
★ 13k • written 4.2 years ago by
Ndimensional
▴ 20
0
votes
1
reply
1.9k
views
Pathview: visualization of data
pathview
data visualization
updated 8.2 years ago by
Luo Weijun
★ 1.6k • written 8.2 years ago by
Guido Hooiveld
★ 3.9k
0
votes
1
reply
620
views
DNA Deferential metheylation
data visualization
7.4 years ago
tarek_2050
• 0
1
vote
1
reply
1.9k
views
Using pathview with uncommon species leads to Errors
pathview
Kegg
rnaseq
data visualization
updated 7.8 years ago by
Luo Weijun
★ 1.6k • written 7.8 years ago by
rafre
• 0
0
votes
1
reply
2.5k
views
Input file of NGS data for Pathview
rnaseq
pathview
data visualization
updated 8.5 years ago by
Luo Weijun
★ 1.6k • written 8.5 years ago by
amoltej
▴ 10
0
votes
0
replies
827
views
Visualize FlowSet by Date
FlowSet
data visualization
cellcounts
6.9 years ago
Maria
• 0
1
vote
0
replies
1.1k
views
Job:
Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science
data visualization
machine learning
cancer
Job
6.0 years ago • updated 5.9 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
459
views
how to construct mds plot of differentially expressed genes?
differentially expressed genes
mds plot
data visualization
5.1 years ago
pratikshasharma47
• 0
0
votes
0
replies
1.6k
views
Job:
Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics
bioinformatician job
data visualization
Job
8.5 years ago
Doe, Aimee
▴ 40
10 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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Malcolm Cook
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